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Update 10X Conventions
authored
Jun 20, 2023
by
Cornelius Fischer
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10X-Conventions.md
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# Library Index Sets
*
Gene expression
*
Dual Index Kit
**TT**
, Set A : 3' Gene Expression (3GEX) & 5' Gene Expression (5GEX)
*
Dual Index Kit
**NT**
, Set A : 3' Antibody Capture / Feature barcoding (3CFB
*
Dual Index Kit
**NN**
, Set A : 3' Cell Multiplexing (CellPlex)
*
Dual Index Kit
**TN**
, Set A : 5' Gene Expression (5GEX, v2)
*
Dual Index Kit
**TS**
, Set A : 5' Gene expression BEAM (rare, 5GEX, v2)
*
Single Index
**T**
, Set A : 3' Gene Expression (3GEX, v3.1) & 5' Gene expression (5GEX, v2)
*
Single Index Kit
**N**
Set A : Gene Expression (5GEX, v1.1)
*
Chromium i7 Multiplex Kit : 3' Gene Expression (3GEX, v2 and v3)
*
Dual Index Kit
**TT**
, Set A : 3GEX (v3.1) & 5GEX (v2)
*
Dual Index Kit
**NT**
, Set A : 3FB (v3.1)
*
Dual Index Kit
**NN**
, Set A : 3GEX CellPlex (v3.1)
*
Dual Index Kit
**TN**
, Set A: 5GEX (v2)
*
Dual Index Kit
**TS**
, Set A: 5GEX BEAM (v2, rare)
*
Single Index
**T**
, Set A: 3GEX (v3.1) & 5GEX (v2)
*
Single Index Kit
**N**
Set A: 5GEX (v1.1) & ATAC (v1.1)
*
Chromium i7 Multiplex Kit: 3GEX (v2 & v3)
# Feature Reference CSV file ([example](https://cf.10xgenomics.com/samples/cell-vdj/7.1.0/vdj_v1_hs_pbmc2_5gex_protein/vdj_v1_hs_pbmc2_5gex_protein_feature_ref.csv))
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