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available resources
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## Data Storage and Archiving
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> raw data will be kept on the BIH-HPC storage for now. You are still welcome to implement your own archiving solution.
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>
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>
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> If you want to upload your data to SODAR, you should get in contact with CUBI (see https://www.cubi.bihealth.org/services/std_processing/).
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>
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>
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> I just checked the PRF for A4379 and you choose FASTQ as delivery format, thus the demultiplexing is done by us (Genomics Platform). We will not perform alignment or other tertiary analysis of NGS data.
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>
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> There are at least 3 options to get access to a clusters for your own pipelines:
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>
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> - MDC-MaxCluster: https://nagios.mdc-berlin.net/prod/wiki / helpdesk@mdc-berlin.de
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> - BIH-HPC: https://hpc-docs.cubi.bihealth.org / hpc-helpdesk@bih-charite.de
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> - Charite SC-Cluster: https://git.bihealth.org/charite-sc-public/sc-wiki / sc-hpc-helpdesk@charite.de
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>
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> Please check the homepages and request access and a project according to your affiliation.
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> |
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* **Raw Data Storage**: Raw data will be kept on the BIH-HPC storage for now. If you recieve your data at MAX cluster directly, data is available in your **group folder** for the data type indicated in the project registration form. Both raw and processed data are independently archived and accessible upon request to MDC helpdesk.
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* **Uploading Data to SODAR**: If you wish to upload your data to SODAR, please contact CUBI. For more information, visit the [CUBI Services page](https://www.cubi.bihealth.org/services/std_processing/).
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## Data Delivery and Processing
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* **Delivery Format**: If you have chosen FASTQ as the delivery format, demultiplexing will be handled by the Genomics Platform. Please note that we do not perform alignment or other tertiary analysis of NGS data.
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## Accessing Clusters for Custom Pipelines
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To run your own analysis pipelines on your data, you can access the following clusters. Please check the respective homepages and request access and a project according to your affiliation:
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1. **MDC-MaxCluster**:
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* [MDC-MaxCluster Wiki](https://nagios.mdc-berlin.net/prod/wiki)
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* Contact: helpdesk@mdc-berlin.de
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2. **BIH-HPC**:
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* [BIH-HPC Documentation](https://hpc-docs.cubi.bihealth.org)
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* Contact: hpc-helpdesk@bih-charite.de
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3. **Charité SC-Cluster**:
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* [Charité SC Wiki](https://git.bihealth.org/charite-sc-public/sc-wiki)
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* Contact: sc-hpc-helpdesk@charite.de |
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