Data Storage and Archiving
- Raw Data Storage: Raw data will be kept on the BIH-HPC storage. If you receive your data directly on the MAX cluster, it will be available in your group folder according to the data type indicated in the project registration form. Both raw and processed data are independently archived and accessible upon request to the MDC helpdesk.
- Uploading Data to SODAR: If you wish to upload your data to SODAR, please contact CUBI. For more information, visit the CUBI Services page.
Data Delivery and Processing
- Delivery Format: If you have chosen FASTQ as the delivery format, demultiplexing will be handled by the Genomics Platform. Please note that we do not perform alignment or other tertiary analysis of NGS data.
Accessing Clusters for Custom Pipelines
To run your own analysis pipelines on your data, you can access the following clusters. Please check the respective homepages and request access and a project according to your affiliation:
- MDC-MaxCluster: MDC-MaxCluster Wiki | Contact: helpdesk@mdc-berlin.de
- BIH-HPC: BIH-HPC Documentation | Contact: hpc-helpdesk@bih-charite.de
- Charité SC-Cluster: Charité SC Wiki |Contact: sc-hpc-helpdesk@charite.de